raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:98938

Isolated colobomatous microphthalmia

Synonyms: Isolated microphthalmia with colobomatous cyst

Type
Malformation syndrome
Group
Disorder
Inheritance
Autosomal dominant, Autosomal recessive
Age of onset
Antenatal, Neonatal
Status
active

Colobomatous microphthalmia is a developmental disorder of the eye characterized by unilateral or bilateral microphthalmia associated with ocular coloboma.

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
enIsolated colobomatous microphthalmiaIsolated microphthalmia with colobomatous cyst
frMicrophtalmie colobomateuse isoléeMicrophtalmie isolée avec kyste colobomateux
deIsolierte kolobomatöse MikrophthalmieIsolierte Mikrophthalmie mit kolobomatöser Zyste
esMicroftalmia colobomatosa aisladaMicroftalmia aislada con quistes colobomatosos
itMicroftalmia colobomatosa isolataMicroftalmia isolata con cisti colobomatosa
nlGeïsoleerde colobomateuze microftalmieGeïsoleerde microftalmie met colobomateuze cyste
ptMicroftalmia colobomatosa
plMałoocze szczelinowateMAC · Małoocze - bezocze - coloboma · Małoocze z torbielą szczelinową
csKolobomatózní mikroftalmieMAC · Mikroftalmie s kolobomatózní cystou · Syndrom zahrnující mikroftalmii, anoftalmii a kolobom
ukКолобоматозна мікрофтальміяMAC · Мікрофтальмія з колобоматозною кістою · Синдром мікрофтальмії-анофтальмії-колобоми
zh缺损性小眼小眼-无眼-眼球缺损综合征
trKolobomatöz mikroftalmiMAC · Kolobomatöz kistli mikroftalmi · Mikroftalmi-anoftalmi-kolobom sendromu

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
OMIM251505BTNTvalidated
OMIM300345Evalidated
OMIM601186NTBTvalidated
OMIM605738BTNTvalidated
OMIM610092BTNTvalidated
OMIM611638BTNTvalidated
OMIM613703BTNTvalidated
OMIM614497BTNTvalidated
OMIM615145BTNTvalidated
OMIM616428BTNTvalidated
ICD-10Q11.2NTBTattributedvalidated
ICD-11LA10.0NTBTindexvalidated
MONDO0000170Evalidated
MONDO170Evalidated
UMLSC4255043Evalidated
GARD3644Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (1):

Children (2):

4

Genes

13 direct · 11 via subtypes
GeneAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
GDF6Candidate gene tested inNot yet assessedHGNC:4221ENSG000001564666011478q22.1growth differentiation factor 619864492[PMID]
SIX6Candidate gene tested inNot yet assessedHGNC:10892ENSG0000018430260632614q23.1SIX homeobox 6
ABCB6Disease-causing germline mutation(s) inAssessedHGNC:47ENSG000001156576054522q35ATP binding cassette subfamily B member 6 (LAN blood group)22226084[PMID]
ALDH1A3Disease-causing germline mutation(s) inAssessedHGNC:409ENSG0000018425460046315q26.3aldehyde dehydrogenase 1 family member A323312594[PMID]
GDF3Disease-causing germline mutation(s) inAssessedHGNC:4218ENSG0000018434460652212p13.31growth differentiation factor 319864492[PMID]
OTX2Disease-causing germline mutation(s) inAssessedHGNC:8522ENSG0000016558860003714q22.3orthodenticle homeobox 224033328[PMID]
PORCNDisease-causing germline mutation(s) inAssessedHGNC:17652ENSG00000102312300651Xp11.23porcupine O-acyltransferase33111437[PMID]
RAXDisease-causing germline mutation(s) inAssessedHGNC:18662ENSG0000013443860188118q21.32retina and anterior neural fold homeobox24033328[PMID]
RBP4Disease-causing germline mutation(s) inAssessedHGNC:9922ENSG0000013820718025010q23.33retinol binding protein 425910211[PMID]
SOX2Disease-causing germline mutation(s) inAssessedHGNC:11195ENSG000001814491844293q26.33SRY-box transcription factor 224033328[PMID]
STRA6Disease-causing germline mutation(s) inAssessedHGNC:30650ENSG0000013786861074515q24.1signaling receptor and transporter of retinol STRA621901792[PMID]
TENM3Disease-causing germline mutation(s) inAssessedHGNC:29944ENSG000002183366100834q34.3-q35.1teneurin transmembrane protein 322766609[PMID]
VSX2Disease-causing germline mutation(s) inAssessedHGNC:1975ENSG0000011961414299314q24.3visual system homeobox 215257456[PMID]

Recorded by Orphanet on subtypes of this disorder:

GeneSubtypeAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
SIX6ORPHA:35612Isolated complete colobomatous microphthalmiaCandidate gene tested inNot yet assessedHGNC:10892ENSG0000018430260632614q23.1SIX homeobox 6
ALDH1A3ORPHA:35612Isolated complete colobomatous microphthalmiaDisease-causing germline mutation(s) inAssessedHGNC:409ENSG0000018425460046315q26.3aldehyde dehydrogenase 1 family member A323312594[PMID]
BEST1ORPHA:35612Isolated complete colobomatous microphthalmiaDisease-causing germline mutation(s) inAssessedHGNC:12703ENSG0000016799560785411q12.3bestrophin 119375515[PMID]
CRB1ORPHA:35612Isolated complete colobomatous microphthalmiaDisease-causing germline mutation(s) inAssessedHGNC:2343ENSG000001343766042101q31.3crumbs cell polarity complex component 119375515[PMID]
MFRPORPHA:35612Isolated complete colobomatous microphthalmiaDisease-causing germline mutation(s) inAssessedHGNC:18121ENSG0000023571860622711q23.3membrane frizzled-related protein15976030[PMID]
OTX2ORPHA:35612Isolated complete colobomatous microphthalmiaDisease-causing germline mutation(s) inAssessedHGNC:8522ENSG0000016558860003714q22.3orthodenticle homeobox 224033328[PMID]
PRSS56ORPHA:35612Isolated complete colobomatous microphthalmiaDisease-causing germline mutation(s) inAssessedHGNC:39433ENSG000002374126138582q37.1serine protease 5621850159[PMID]
RAXORPHA:35612Isolated complete colobomatous microphthalmiaDisease-causing germline mutation(s) inAssessedHGNC:18662ENSG0000013443860188118q21.32retina and anterior neural fold homeobox24033328[PMID]
SHHORPHA:730721Isolated partial colobomatous microphthalmiaDisease-causing germline mutation(s) inAssessedHGNC:10848ENSG000001646906007257q36.3sonic hedgehog signaling molecule12503095[PMID]
SOX2ORPHA:35612Isolated complete colobomatous microphthalmiaDisease-causing germline mutation(s) inAssessedHGNC:11195ENSG000001814491844293q26.33SRY-box transcription factor 224033328[PMID]
TMEM98ORPHA:35612Isolated complete colobomatous microphthalmiaDisease-causing germline mutation(s) inAssessedHGNC:24529ENSG0000000604261594917q11.2transmembrane protein 9824852644[PMID]
5

Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Prevalence at birth1-5 / 10 00019 / 100 000United KingdomValue and classValidated11826019[PMID]
Point prevalence1-5 / 10 00019 / 100 000United KingdomValue and classValidated11826019[PMID]_ORPHANET

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

6

HPO phenotypes

Orphanet has no HPO annotation for this code in this release.

7

Sources for this card