raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:238666

Isolated congenital hypogonadotropic hypogonadism

Synonyms: Gonadotropic deficiency · Isolated congenital gonadotropin deficiency · Isolated gonadotropin-releasing hormone deficiency

Type
Disease
Group
Disorder
Inheritance
Autosomal dominant, Autosomal recessive, Oligogenic, Unknown, X-linked recessive
Age of onset
Adolescent, Infancy, Neonatal
Status
active

A rare, genetic pituitary hormone deficiency characterized by gonadotropin (Gn) deficiency with low sex steroid levels associated with low levels of follicle stimulating hormone (FSH) and luteinizing hormone (LH). This disorder may be associated with a normal (normosmic) or impaired sense of smell (Kallmann syndrome).

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
enIsolated congenital hypogonadotropic hypogonadismGonadotropic deficiency · Isolated congenital gonadotropin deficiency · Isolated gonadotropin-releasing hormone deficiency
frHypogonadisme hypogonadotrope congénital isoléDéficit congénital isolé en gonadotropine · Déficit gonadotropique · Déficit isolé en hormone de libération des gonadotrophines
deHypogonadotroper Hypogonadismus, isolierter kongenitalerGonadotropin-Defizienz, isolierte kongenitale · Gonadotropin-Mangel · Isolierter Gonadotropin-Releasing-Hormon-Mangel
esHipogonadismo hipogonadotrópico congénito aisladoDeficiencia de gonadotropina congénita aislada · Deficiencia de hormona liberadora de gonadotropina aislada · Deficiencia gonadotrópica
itIpogonadismo ipogonadotropo congenito isolato
nlGeïsoleerd congenitaal hypogonadotroop hypogonadismeGeïsoleerde deficiëntie van gonadotropine-'releasing' hormoon · Geïsoleerde deficiëntie van gonadotropinevrijmakend hormoon · Deficiëntie van gonadotroop hormoon · Geïsoleerde congenitale deficiëntie van gonadotrofine
ptHipogonadismo hipogonadotrópico congénito isoladoDeficiência de gonadotropina congénita isolada · Deficiência de hormona libertadora de gonadotrofina isolada · Défice gonadotrópico
plIzolowany wrodzony hipogonadyzm hipogonadotropowy= en
csIzolovaný vrozený hypogonadotropní hypogonadismus= en
ukІзольований вроджений гіпогонадотропний гіпогонадизмГонадотропний дефіцит · Ізольований вроджений дефіцит гонадотропінів · Ізольований дефіцит гонадотропін-рилізинг-гормону
zh孤立性先天性低促性腺素性功能减退症= en
trİzole doğumsal hipogonadotropik hipogonadizm= en

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
ICD-10E23.0NTBTattributedvalidated
ICD-115A61.0NTBTindexvalidated
MONDO0016553Evalidated
UMLSC5679849Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (2):

Children (2):

4

Genes

0 direct · 42 via subtypes

Orphanet records no gene directly on this code.

Recorded by Orphanet on subtypes of this disorder:

GeneSubtypeAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
ANOS1ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:6211ENSG00000011201300836Xp22.31anosmin 121168128[PMID]
DCCORPHA:478Kallmann syndromeDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:2701ENSG0000018732312047018q21.2DCC netrin 1 receptor29202173[PMID]
FEZF1ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:22788ENSG000001286106133017q31.32FEZ family zinc finger 125192046[PMID]
FGF8ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:3686ENSG0000010783160048310q24.32fibroblast growth factor 818596921[PMID]_20463092[PMID]
FGF8ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:3686ENSG0000010783160048310q24.32fibroblast growth factor 818596921[PMID]_20463092[PMID]
FGFR1ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:3688ENSG000000777821363508p11.23fibroblast growth factor receptor 117235395[PMID]
FGFR1ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:3688ENSG000000777821363508p11.23fibroblast growth factor receptor 117235395[PMID]
GNRHRORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:4421ENSG000001091631388504q13.2gonadotropin releasing hormone receptor22918878[PMID]
HS6ST1ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:5201ENSG000001367206048462q14.3heparan sulfate 6-O-sulfotransferase 121700882[PMID]
HS6ST1ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:5201ENSG000001367206048462q14.3heparan sulfate 6-O-sulfotransferase 121700882[PMID]_23997646[PMID]
KISS1ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:6341ENSG000001704986032861q32.1KiSS-1 metastasis suppressor22335740[PMID]
KISS1RORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:4510ENSG0000011601460416119p13.3KISS1 receptor21193544[PMID]
PROK2ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:18455ENSG000001634216070023p13prokineticin 217959774[PMID]_18682503[PMID]
PROK2ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:18455ENSG000001634216070023p13prokineticin 218682503[PMID]
PROKR2ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:15836ENSG0000010129260712320p12.3prokineticin receptor 218682503[PMID]
PROKR2ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:15836ENSG0000010129260712320p12.3prokineticin receptor 218682503[PMID]
SEMA3AORPHA:478Kallmann syndromeDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:10723ENSG000000752136039617q21.11semaphorin 3A22416012[PMID]
SOX10ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:11190ENSG0000010014660222922q13.1SRY-box transcription factor 1023643381[PMID]
TAC3ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:11521ENSG0000016686316233012q13.3tachykinin precursor 319079066[PMID]
TACR3ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:11528ENSG000001698361623324q24tachykinin receptor 319079066[PMID]
CCDC141ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:26821ENSG000001634926160312q31.2coiled-coil domain containing 14128324054[PMID]
CHD7ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) inAssessedHGNC:20626ENSG000001713166088928q12.2chromodomain helicase DNA binding protein 718834967[PMID]
CHD7ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:20626ENSG000001713166088928q12.2chromodomain helicase DNA binding protein 718834967[PMID]
DUSP6ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) inAssessedHGNC:3072ENSG0000013931860274812q21.33dual specificity phosphatase 623643382[PMID]
DUSP6ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:3072ENSG0000013931860274812q21.33dual specificity phosphatase 623643382[PMID]
EMX2ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) inAssessedHGNC:3341ENSG0000017037060003510q26.11empty spiracles homeobox 241765865[PMID]
EMX2ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:3341ENSG0000017037060003510q26.11empty spiracles homeobox 241765865[PMID]
FGF17ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) inAssessedHGNC:3673ENSG000001588156037258p21.3fibroblast growth factor 1723643382[PMID]
FGF17ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:3673ENSG000001588156037258p21.3fibroblast growth factor 1723643382[PMID]
FLRT3ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:3762ENSG0000012584860480820p12.1fibronectin leucine rich transmembrane protein 323643382[PMID]
GNRH1ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) inAssessedHGNC:4419ENSG000001474371527608p21.2gonadotropin releasing hormone 120887715[PMID]_20389089[PMID]
HESX1ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:4877ENSG000001636666018023p14.3HESX homeobox 123465708[PMID]
IL17RDORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:17616ENSG000001447306068073p14.3interleukin 17 receptor D23643382[PMID]
NDNFORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:26256ENSG000001733766165064q27neuron derived neurotrophic factor31883645[PMID]
NHLH2ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) inAssessedHGNC:7818ENSG000001775511623611p13.1nescient helix-loop-helix 235066646[PMID]
NSMFORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) inAssessedHGNC:29843ENSG000001658026081379q34.3NMDA receptor synaptonuclear signaling and neuronal migration factor
SPRY4ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) inAssessedHGNC:15533ENSG000001876786079845q31.3sprouty RTK signaling antagonist 423643382[PMID]
SPRY4ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:15533ENSG000001876786079845q31.3sprouty RTK signaling antagonist 423643382[PMID]
TACR3ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:11528ENSG000001698361623324q24tachykinin receptor 323643382[PMID]_19079066[PMID]
WDR11ORPHA:432Normosmic congenital hypogonadotropic hypogonadismDisease-causing germline mutation(s) inAssessedHGNC:13831ENSG0000012000860641710q26.12WD repeat domain 1120887964[PMID]
WDR11ORPHA:478Kallmann syndromeDisease-causing germline mutation(s) inAssessedHGNC:13831ENSG0000012000860641710q26.12WD repeat domain 1120887964[PMID]
CCDC141ORPHA:478Kallmann syndromeMajor susceptibility factor inAssessedHGNC:26821ENSG000001634926160312q31.2coiled-coil domain containing 14128324054[PMID]
5

Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Point prevalenceUnknown—WorldwideClass onlyValidatedORPHANET
Prevalence at birth1-9 / 100 000—WorldwideClass onlyValidated21682876[PMID]_ORPHANET

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

6

HPO phenotypes

Orphanet has no HPO annotation for this code in this release.

7

Sources for this card