raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:85167

Spondylometaphyseal dysplasia-cone-rod dystrophy syndrome

Synonyms: SMD-CRD

Type
Disease
Group
Disorder
Inheritance
Autosomal recessive
Age of onset
No data available
Status
active

Spondylometaphyseal dysplasia-cone-rod dystrophy syndrome is characterised by the association of spondylometaphyseal dysplasia (marked by platyspondyly, shortening of the tubular bones and progressive metaphyseal irregularity and cupping), with postnatal growth retardation and progressive visual impairment due to cone-rod dystrophy. So far, it has been described in eight individuals. Transmission appears to be autosomal recessive.

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
enSpondylometaphyseal dysplasia-cone-rod dystrophy syndromeSMD-CRD
frSyndrome de dysplasie spondylo-métaphysaire-dystrophie des cônes et des bâtonnetsSMD-CRD · Syndrome de dysplasie spondylo-métaphysaire-dystrophie cone-rod
deSpondylometaphysäre Dysplasie mit Zapfen-Stäbchendystrophie= en
esSíndrome de displasia espondilometafisaria-distrofia de conos-bastones= en
itDisplasia spondilometafisaria - distrofia dei coni e dei bastoncelli= en
nlSpondylometafysaire dysplasie - kegel-staafdystrofie-syndroom= en
ptDSíndrome de displasia espondilometafisária-distrofia de cones e bastonetes= en
plDysplazja kręgowo-przynasadowa - dystrofia czopków i pręcików= en
csSyndrom zahrnující spondylometafyzární dysplázii a dystrofii tyčinek a čípků= en
ukСиндром спондилометафізарної дисплазії - конусовидної дистрофії= en
zh脊椎干骺端发育不良-视锥-视杆细胞营养不良综合征= en
trSpondilometafizer displazi-koni-çubuk distrofisi sendromu= en

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
OMIM608940Evalidated
ICD-10Q77.8NTBTattributedvalidated
ICD-11LD24.4NTBTindexvalidated
MONDO0012160Evalidated
UMLSC4304887Evalidated
GARD10647Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (2):

No children.

4

Genes

1 direct
GeneAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
PCYT1ADisease-causing germline mutation(s) (loss of function) inAssessedHGNC:8754ENSG000001612171236953q29phosphate cytidylyltransferase 1A, choline24387990[PMID]_24387991[PMID]
5

Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Cases/families18 casesWorldwideCase(s)Validated24387990[PMID]
Point prevalence<1 / 1 000 000—WorldwideClass onlyValidatedORPHANET

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

6

HPO phenotypes

39 annotations · validated 2021-08-20
HPOTerm (as annotated by Orphanet)Diagnostic
Very frequent (99-80%)
HP:0005930Abnormality of epiphysis morphology
HP:0007703Abnormality of retinal pigmentation
HP:0002979Bowing of the legs
HP:0006487Bowing of the long bones
HP:0001156Brachydactyly
HP:0000548Cone/cone-rod dystrophy
HP:0002812Coxa vara
HP:0003015Flared metaphysis
HP:0010583Ivory epiphyses
HP:0003025Metaphyseal irregularity
HP:0005054Metaphyseal spurs
HP:0003300Ovoid vertebral bodies
HP:0000926Platyspondyly
HP:0030329Retinal thinning
HP:0008905Rhizomelia
HP:0003510Severe short stature
HP:0003026Short long bone
HP:0010049Short metacarpal
HP:0009803Short phalanx of finger
HP:0000505Visual impairment
Frequent (79-30%)
HP:0000539Abnormality of refraction
HP:0000887Cupped ribs
HP:0031171Femoral spur
HP:0000946Hypoplastic ilia
HP:0003375Narrow greater sciatic notch
Occasional (29-5%)
HP:0000589Coloboma
HP:0007957Corneal opacity
HP:0009918Ectopia pupillae
HP:0012153Hypotriglyceridemia
HP:0001132Lens subluxation
HP:0007401Macular atrophy
HP:0000568Microphthalmia
HP:0000639Nystagmus
HP:0000602Ophthalmoplegia
HP:0001105Retinal atrophy
HP:0002650Scoliosis
HP:0000486Strabismus
HP:0007688Undetectable light- and dark-adapted electroretinogram
Excluded (0%)
HP:0001249Intellectual disability

Run the differential on the 12 obligate / very frequent terms

Annotation source: 24387991[PMID]_30559292[PMID]_24476460[PMID]

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Sources for this card