raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:352530

Intellectual disability-obesity-brain malformations-facial dysmorphism syndrome

Synonyms: Autosomal recessive intellectual disability due to TRAPPC9 deficiency

Type
Disease
Group
Disorder
Inheritance
Autosomal recessive
Age of onset
Infancy, Neonatal
Status
active

Intellectual disability-obesity-brain malformations-facial dysmorphism syndrome is a rare, syndromic intellectual disability primarily characterized by moderate to severe intellectual disability, true-to-relative microcephaly and brain abnormalities including a thin corpus callosum, cerebellar hypoplasia, cerebral white matter hypoplasia and multi-focal hyperintensity of cerebral white matter on MRI. Obesity and distinctive craniofacial dysmorphism (including brachycephaly, round face, straight eyebrows, synophrys, hypertelorism, epicanthus, wide and depressed nasal bridge, protruding ears with uplifted lobe, downslanting corners of the mouth) are additional features.

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
enIntellectual disability-obesity-brain malformations-facial dysmorphism syndromeAutosomal recessive intellectual disability due to TRAPPC9 deficiency
frSyndrome de déficience intellectuelle-obésité-malformations cérébrales-dysmorphie facialeDéficience intellectuelle autosomique récessive par déficit en TRAPPC9
deIntelligenzminderung-Adipositas-Hirnfehlbildungen-Gesichtsdysmorphie-SyndromIntelligenzminderung, autosomal-rezessive, durch TRAPPC9-Mangel
esSíndrome de discapacidad intelectual-obesidad-malformaciones cerebrales-dismorfia facialDiscapacidad intelectual autosómica recesiva por deficiencia de TRAPPC9
itSindrome disabilità intellettiva-obesità -malformazioni cerebrali-dismorfismi faccialiDeficit cognitivo autosomico recessivo da deficit di TRAPPC9
nlIntellectuele achterstand - obesitas - hersenmalformaties - faciale dysmorfie-syndroomAutosomaal recessieve intellectuele achterstand door TRAPPC9-deficiëntie
ptSíndrome de perturbação do desenvolvimento intelectual-obesidade-malformações cerebrais-dismorfia facialPerturbação do desenvolvimento intelectual devido a deficiência de TRAPPC9 autossómica recessiva
plNiepełnosprawność intelektualna - otyłość - malformacje mózgu - dysmorfia twarzyAutosomalna recesywna niepełnosprawność intelektualna z powodu niedoboru TRAPPC9
csSyndrom zahrnující mentální retardaci, obezitu, vývojové vady mozku a faciální dysmorfismusAutozomálně recesivní mentální retardace způsobená deficitem TRAPPC9
ukСиндром інтелектуальної недостатності-ожиріння-вад розвитку головного мозку-дисморфізму обличчяАутосомно-рецесивна розумова відсталість внаслідок дефіциту TRAPPC9
zh智力障碍-肥胖-脑畸形-面部畸形综合征TRAPPC9基因缺陷所致常染色体隐性遗传智力障碍
trZihinsel yetersizlik-obezite-beyin malformasyonları-yüz dismorfizm sendromuTRAPPC9 eksikliğine bağlı otozomal çekinik zihinsel yetersizlik

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
OMIM613192Evalidated
ICD-10Q04.8NTBTattributedvalidated
MONDO0018123Evalidated
UMLSC4706414Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (3):

No children.

4

Genes

1 direct
GeneAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
TRAPPC9Disease-causing germline mutation(s) (loss of function) inAssessedHGNC:30832ENSG000001676326119668q24.3trafficking protein particle complex subunit 922549410[PMID]
5

Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Cases/families2 casesWorldwideCase(s)Validated22549410[PMID]
Point prevalence<1 / 1 000 000—WorldwideClass onlyValidatedORPHANET

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

6

HPO phenotypes

31 annotations · validated 2016-04-25
HPOTerm (as annotated by Orphanet)Diagnostic
Very frequent (99-80%)
HP:0001999Abnormal facial shape
HP:0012443Abnormality of brain morphology
HP:0000248Brachycephaly
HP:0001321Cerebellar hypoplasia
HP:0002120Cerebral cortical atrophy
HP:0004209Clinodactyly of the 5th finger
HP:0000851Congenital hypothyroidism
HP:0007642Congenital stationary night blindness
HP:0002714Downturned corners of mouth
HP:0001263Global developmental delay
HP:0000316Hypertelorism
HP:0002079Hypoplasia of the corpus callosum
HP:0001252Hypotonia
HP:0010864Intellectual disability, severe
HP:0002265Large fleshy ears
HP:0002047Malignant hyperthermia
HP:0000252Microcephaly
HP:0007052Multifocal cerebral white matter abnormalities
HP:0000341Narrow forehead
HP:0001513Obesity
HP:0000311Round face
HP:0000664Synophrys
HP:0001182Tapered finger
HP:0000219Thin upper lip vermilion
HP:0009891Underdeveloped supraorbital ridges
HP:0000431Wide nasal bridge
Frequent (79-30%)
HP:0000377Abnormal pinna morphology
HP:0000286Epicanthus
HP:0002123Generalized myoclonic seizure
HP:0011228Horizontal eyebrow
HP:0001250Seizure

Run the differential on the 12 obligate / very frequent terms

Annotation source: 20004765[PMID]_22549410[PMID]

7

Sources for this card