raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:314655

Severe neonatal hypotonia-seizures-encephalopathy syndrome due to 5q31.3 microdeletion

Synonyms: 5q31.3 microdeletion syndrome · Del(5)(q31.3) · Monosomy 5q31.3

Type
Etiological subtype
Group
Subtype of disorder
Inheritance
Unknown
Age of onset
Infancy, Neonatal
Status
active

This disease is described under PURA-related severe neonatal hypotonia-seizures-encephalopathy syndrome

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
enSevere neonatal hypotonia-seizures-encephalopathy syndrome due to 5q31.3 microdeletion5q31.3 microdeletion syndrome · Del(5)(q31.3) · Monosomy 5q31.3
frSyndrome d'hypotonie-épilepsie-encéphalopathie sévère neonatale dû à une microdélétion 5q31.3Del(5)(q31.3) · Monosomie 5q31.3 · Syndrome de microdélétion 5q31.3
deSchwere neonatale Hypotonie-Krämpfe-Enzephalopathie-Syndrom durch Mikrodeletion 5q31.3Del(5)(q31.3) · Mikrodeletionssyndrom 5q31.3 · Monosomie 5q31.3
esSíndrome de hipotonía-crisis-encefalopatía neonatal grave por microdeleción 5q31.3Del(5)(q31.3) · Monosomía 5q31.3 · Síndrome de microdeleción 5q31.3
itSindrome ipotonia neonatale grave-epilessia-encefalopatia, da microdelezione 5q31.3Del(5)(q31.3) · Monosomia 5q31.3 · Sindrome da microdelezione 5q31.3
nlErnstige neonatale hypotonie - insulten - encefalopathie-syndroom door 5q31.3-microdeletie5q31.3-microdeletiesyndroom · Del(5)(q31.3) · Monosomie 5q31.3
ptSíndrome de hipotonia neonatal grave-convulsões-encefalopatia por microdeleção 5q31.3Del(5)(q31.3) · Monossomia 5q31.3
plCiężka hipotonia noworodków-napady padaczkowe-encefalopatia spowodowane mikrodelecją 5q31.3Del(5)(q31.3) · Monosomia 5q31.3 · Zespół mikrodelecji 5q31.3
csMikrodeleční syndrom 5q31.3 zahrnující těžkou novorozeneckou hypotonii, záchvaty a encefalopatiiDel(5)(q31.3) · Monozomie 5q31.3 · Mikrodeleční syndrom 5q31.3
ukСиндром тяжкої неонатальної гіпотонії-судом-енцефалопатії. зумовлений мікроделецією 5q31.3Синдром мікроделеції 5q31.3 · Del(5)(q31.3) · Моносомія 5q31.3
zh5q31.3微缺失所致重型新生儿低张力-惊厥-脑病综合征5q31.3微缺失综合征
tr5q31.3 mikrodelesyonuna bağlı ağır Yenidoğan hipotoni-nöbetler-ensefalopati sendromuDel(5)(q31.3) · Monozomi 5q31.3 · 5q31.3 mikrodelesyon sendromu
2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
OMIM616158NTBTvalidated
ICD-10Q93.5NTBTattributedvalidated
MONDO0017811Evalidated
UMLSC4708510Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (2):

No children.

4

Genes

1 direct
GeneAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
PURARole in the phenotype ofAssessedHGNC:9701ENSG000001851296004735q31.3purine rich element binding protein A23950017[PMID]
5

Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Cases/families7 casesWorldwideCase(s)Validated23950017[PMID]
Point prevalence<1 / 1 000 000—WorldwideClass onlyValidatedORPHANET_23950017[PMID]

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

6

HPO phenotypes

37 annotations · validated 2020-11-12
HPOTerm (as annotated by Orphanet)Diagnostic
Frequent (79-30%)
HP:0012444Brain atrophy
HP:0410263Brain imaging abnormality
HP:0002002Deep philtrum
HP:0012448Delayed myelination
HP:0000750Delayed speech and language development
HP:0005280Depressed nasal bridge
HP:0002353EEG abnormality
HP:0008872Feeding difficulties in infancy
HP:0000218High palate
HP:0010864Intellectual disability, severe
HP:0000347Micrognathia
HP:0001270Motor delay
HP:0000341Narrow forehead
HP:0001319Neonatal hypotonia
HP:0005487Prominent metopic ridge
HP:0000508Ptosis
HP:0002098Respiratory distress
HP:0005338Sparse lateral eyebrow
HP:0000506Telecanthus
HP:0010804Tented upper lip vermilion
Occasional (29-5%)
HP:0001627Abnormal heart morphology
HP:0000463Anteverted nares
HP:0002104Apnea
HP:0011951Aspiration pneumonia
HP:0025190Bilateral tonic-clonic seizure with generalized onset
HP:0000494Downslanted palpebral fissures
HP:0011097Epileptic spasm
HP:0011167Focal tonic seizure
HP:0002791Hypoventilation
HP:0000369Low-set ears
HP:0001336Myoclonus
HP:0010442Polydactyly
HP:0006532Recurrent pneumonia
HP:0001250Seizure
HP:0006829Severe muscular hypotonia
HP:0003196Short nose
HP:0011098Speech apraxia

Annotation source: 22711443[PMID]_28448108[PMID]

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Sources for this card