raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:313892

Developmental and speech delay due to SOX5 deficiency

Type
Clinical subtype
Group
Subtype of disorder
Inheritance
Autosomal dominant, Not applicable
Age of onset
Infancy, Neonatal
Status
active

Developmental and speech delay due to SOX5 deficiency is a rare genetic syndromic intellectual disability characterized by mild to severe global developmental delay, intellectual disability and behavioral abnormalities, hypotonia, strabismus, optic nerve hypoplasia and mild facial dysmorphic features (down slanting palpebral fissures, frontal bossing, crowded teeth, auricular abnormalities and prominent philtral ridges). Other associated clinical features may include seizures and skeletal anomalies (kyphosis/scoliosis, pectus deformities).

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
enDevelopmental and speech delay due to SOX5 deficiency
frRetard de développement et de langage par déficit en SOX5
deEntwicklungs- und Sprachverzögerung durch SOX5-Mangel
esRetraso del desarrollo y del lenguaje por deficiencia de SOX5
itRitardo dello sviluppo e del linguaggio da deficit di SOX5
nlOntwikkelings- en spraakachterstand door SOX5-deficiëntie
ptPerturbação do desenvolvimento e da linguagem devido à deficiência SOX5
plOpóźnienie rozwoju i mowy z powodu niedoboru SOX5
csOpoždění vývoje a řeči způsobené SOX5 deficitem
ukЗатримка розвитку та мовлення, зумовлена дефіцитом SOX5
zhSOX5基因所致发育和言语迟滞
trSOX5 eksikliğine bağlı gelişim ve konuşma gecikmesi

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
OMIM616803NTBTvalidated
ICD-10Q87.8NTBTattributedvalidated
MONDO0017782Evalidated
UMLSC4749915Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (1):

No children.

4

Genes

1 direct
GeneAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
SOX5Disease-causing germline mutation(s) inAssessedHGNC:11201ENSG0000013453260497512p12.1SRY-box transcription factor 522290657[PMID]
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Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Cases/families14 casesWorldwideCase(s)Validated26111154[PMID]_29477873[PMID]
Point prevalence<1 / 1 000 000—WorldwideClass onlyValidatedORPHANET_29477873[PMID]

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

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HPO phenotypes

31 annotations · validated 2016-12-16
HPOTerm (as annotated by Orphanet)Diagnostic
Obligate (100%)
HP:0001249Intellectual disability
HP:0001270Motor delay
Very frequent (99-80%)
HP:0000750Delayed speech and language development
HP:0430028Hyperplasia of the maxilla
Frequent (79-30%)
HP:00046912-3 toe syndactyly
HP:0012443Abnormality of brain morphology
HP:0000739Anxiety
HP:0000678Dental crowding
HP:0002711Exaggerated median tongue furrow
HP:0000577Exotropia
HP:0002007Frontal bossing
HP:0001252Hypotonia
HP:0002938Lumbar hyperlordosis
HP:0000545Myopia
HP:0000189Narrow palate
HP:0000648Optic atrophy
HP:0000768Pectus carinatum
HP:0000486Strabismus
HP:0005659Thoracic kyphoscoliosis
HP:0002948Vertebral fusion
Occasional (29-5%)
HP:0000733Abnormal repetitive mannerisms
HP:0000078Abnormality of the genital system
HP:0000718Aggressive behavior
HP:0007018Attention deficit hyperactivity disorder
HP:0003316Butterfly vertebrae
HP:0011968Feeding difficulties
HP:0002020Gastroesophageal reflux
HP:0001653Mitral regurgitation
HP:0002650Scoliosis
HP:0001250Seizure
HP:0100716Self-injurious behavior

Run the differential on the 4 obligate / very frequent terms

Annotation source: 22290657[PMID]_26111154[PMID]

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Sources for this card