raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:2880

Phosphoenolpyruvate carboxykinase deficiency

Synonyms: PEPCK deficiency

Type
Disease
Group
Disorder
Inheritance
Autosomal recessive, Mitochondrial inheritance
Age of onset
Infancy, Neonatal
Status
active

A rare gluconeogenesis disorder characterized by recurrent hypoglycemia mostly associated with acute episodes of severe lactic acidosis and hepatic dysfunction including liver failure due to phosphoenolpyruvate carboxykinase enzyme deficiency. Hypoglycemic seizures occur predominantly at the age of 1-2 years and mostly in the mornings. However they can also present neonatally or at a later age, and could re-occur during school age or adulthood. Patients have recognizable pattern of abnormal urine organicacids (including increased tricarboxylic acid cycle metabolites) and inadequate ketone body production during hypoglycemia. Some patients may also have encephalopathy, cerebral edema and seizures thay may result in neuroregression and/or global developmental delay associated to failure to manage hypoglycemia. Some patients may also be asymptomatic.

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
enPhosphoenolpyruvate carboxykinase deficiencyPEPCK deficiency
frDéficit en phosphoénolpyruvate carboxykinaseDéficit en PEPCK
dePhosphoenolpyruvat-Carboxykinase-MangelPEPCK-Mangel
esDeficiencia de fosfoenolpiruvato carboxiquinasaDeficiencia de PEPCK
itDeficit di fosfoenolpiruvato carbossichinasiDeficit di PEPCK
nlDeficiëntie van fosfo-enolpyruvaat-carboxykinasePEPCK-deficiëntie
ptDeficiência de fosfoenolpiruvato carboxicinaseDeficiência de PEPCK
plNiedobór karboksykinazy fosfolenolopirogronianowejNiedobór PEPCK
csDeficit fosfoenolpyruvát karboxykinázyPEPCK deficit
ukДефіцит фосфоенолпіруваткарбоксикіназиДефіцит PEPCK
zh磷酸烯醇式丙酮酸羧激酶缺乏症PEPCK缺乏症
trFosfoenolpiruvat karboksikinaz eksikliğiPEPCK eksikliği

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
OMIM261650BTNTvalidated
OMIM261680BTNTvalidated
ICD-10E74.4NTBTinclusionvalidated
ICD-115C53.0YNTBTindexvalidated
MONDO0017320Evalidated
MeSHC536654Evalidated
UMLSC0268194Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (1):

No children.

Codes that Orphanet moved or referred to this one:

4

Genes

2 direct
GeneAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
PCK1Disease-causing germline mutation(s) inAssessedHGNC:8724ENSG0000012425361416820q13.31phosphoenolpyruvate carboxykinase 1
PCK2Disease-causing germline mutation(s) inAssessedHGNC:8725ENSG0000010088961409514q11.2-q12phosphoenolpyruvate carboxykinase 2, mitochondrial2044592[PMID]
5

Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Cases/families10 casesWorldwideCase(s)ValidatedORPHANET
Point prevalence<1 / 1 000 000—WorldwideClass onlyValidatedORPHANET

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

6

HPO phenotypes

22 annotations · validated 2025-06-04
HPOTerm (as annotated by Orphanet)Diagnostic
Very frequent (99-80%)
HP:0001988Recurrent hypoglycemia
Frequent (79-30%)
HP:0031964Elevated circulating alanine aminotransferase concentration
HP:0031956Elevated circulating aspartate aminotransferase concentration
HP:0034648Elevated urine fumaric acid level
HP:0003217Hyperglutaminemia
HP:0002173Hypoglycemic seizures
HP:0002151Increased circulating lactate concentration
HP:0012402Increased urine alpha-ketoglutarate concentration
HP:0003128Lactic acidosis
HP:0003648Lacticaciduria
Occasional (29-5%)
HP:0006846Acute encephalopathy
HP:0001410Decreased liver function
HP:0002329Drowsiness
HP:0001397Hepatic steatosis
HP:0001325Hypoglycemic coma
HP:0001252Hypotonia
HP:0001254Lethargy
HP:0001998Neonatal hypoglycemia
HP:0012758Neurodevelopmental delay
HP:0002013Vomiting
Very rare (<4-1%)
HP:0001987Hyperammonemia
HP:0000252Microcephaly

Run the differential on the 1 obligate / very frequent terms

Annotation source: 33445193[PMID]_34622459[PMID]_35868242[PMID]_37924129[PMID]

7

Sources for this card