raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:261250

16q24.3 microdeletion syndrome

Synonyms: Del(16)(q24.3) · Monosomy 16q24.3

Type
Malformation syndrome
Group
Disorder
Inheritance
Not applicable, Unknown
Age of onset
Infancy, Neonatal
Status
active

16q24.3 microdeletion syndrome is a recently described syndrome associated with variable developmental delay, facial dysmorphism, seizures and autistic spectrum disorder.

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
en16q24.3 microdeletion syndromeDel(16)(q24.3) · Monosomy 16q24.3
frSyndrome de microdélétion 16q24.3Del(16)(q24.3) · Monosomie 16q24.3
deMikrodeletionssyndrom 16q24.3Del(16)(q24.3) · Monosomie 16q24.3
esSíndrome de microdeleción 16q24.3Del(16)(q24.3) · Monosomía 16q24.3
itSindrome da microdelezione 16q24.3Del(16)(q24.3) · Monosomia 16q24.3
nl16q24.3-microdeletiesyndroomDel(16)(q24.3) · Monosomie 16q24.3
ptSíndrome de microdeleção 16q24.3
plZespół mikrodelecji 16q24.3Del(16)(q24.3) · Monosomia 16q24.3
csSyndrom mikrodelece 16q24.3Del(16)(q24.3) · Monozomie 16q24.3
ukСиндром мікроделеції 16q24.3Del(16)(q24.3) · Моносомія 16q24.3
zh16q24.3微缺失综合征16q24.3单体
tr16q24.3 mikrodelesyon sendromuDel (16) (q24.3) · Monozomi 16q24.3

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
ICD-10Q93.5NTBTattributedvalidated
ICD-11LD44.G0NTBTindexvalidated
MONDO0016838Evalidated
UMLSC4304594Evalidated
GARD10935Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (1):

No children.

4

Genes

1 direct
GeneAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
ANKRD11Role in the phenotype ofNot yet assessedHGNC:21316ENSG0000016752261119216q24.3ankyrin repeat domain 11
5

Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Cases/families27 casesWorldwideCase(s)Validated28422132[PMID]
Point prevalence<1 / 1 000 000—WorldwideClass onlyValidatedORPHANET_28422132[PMID]

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

6

HPO phenotypes

47 annotations · validated 2016-06-01
HPOTerm (as annotated by Orphanet)Diagnostic
Very frequent (99-80%)
HP:0000717Autism
HP:0000348High forehead
HP:0000411Protruding ear
Frequent (79-30%)
HP:0030048Colpocephaly
HP:0002007Frontal bossing
HP:0000218High palate
HP:0002079Hypoplasia of the corpus callosum
HP:0002342Intellectual disability, moderate
HP:0000343Long philtrum
HP:0000347Micrognathia
HP:0000609Optic nerve hypoplasia
HP:0007165Periventricular heterotopia
HP:0000307Pointed chin
HP:0001250Seizure
HP:0000319Smooth philtrum
HP:0002119Ventriculomegaly
HP:0000154Wide mouth
Occasional (29-5%)
HP:0010720Abnormal hair pattern
HP:0000463Anteverted nares
HP:0000483Astigmatism
HP:0004422Biparietal narrowing
HP:0000389Chronic otitis media
HP:0000028Cryptorchidism
HP:0000750Delayed speech and language development
HP:0001644Dilated cardiomyopathy
HP:0002015Dysphagia
HP:0011968Feeding difficulties
HP:0000365Hearing impairment
HP:0002553Highly arched eyebrow
HP:0001385Hip dysplasia
HP:0005518Increased mean corpuscular volume
HP:0002808Kyphosis
HP:0000276Long face
HP:0001653Mitral regurgitation
HP:0000545Myopia
HP:0000639Nystagmus
HP:0000384Preauricular skin tag
HP:0009623Proximal placement of thumb
HP:0002650Scoliosis
HP:0006315Single median maxillary incisor
HP:0000486Strabismus
HP:0012471Thick vermilion border
HP:0001873Thrombocytopenia
HP:0000325Triangular face
HP:0000582Upslanted palpebral fissure
HP:0001629Ventricular septal defect
HP:0000505Visual impairment

Run the differential on the 3 obligate / very frequent terms

Annotation source: 19920853[PMID]

7

Sources for this card