raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:199642

Isolated congenital microcephaly

Type
Malformation syndrome
Group
Disorder
Age of onset
Antenatal, Neonatal
Status
active

A rare neurological disorder characterized by a reduced head circumference at birth with no gross anomalies of brain structure. It can be an isolated finding or it can be associated with seizures, developmental delay, intellectual disability, balance disturbances, hearing loss or vision problems.

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
enIsolated congenital microcephaly
frMicrocéphalie congénitale isolée
deMikrozephalie, isolierte kongenitale
esMicrocefalia congénita aislada
itMicrocefalia congenita isolata
nlGeïsoleerde congenitale microcefalie
ptMicroencefalia
plIzolowana wrodzona mikrocefalia
csIzolovaná vrozená mikrocefalie
ukІзольована вроджена мікроцефалія
zh孤立性先天性小头畸形
trİzole doğumsal mikrosefali

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
ICD-10Q02NTBTattributedvalidated
MONDO0016056Evalidated
UMLSC0025958Evalidated
GARD3603Evalidated
MedDRA10027534Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (2):

Children (2):

4

Genes

0 direct · 31 via subtypes

Orphanet records no gene directly on this code.

Recorded by Orphanet on subtypes of this disorder:

GeneSubtypeAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
DPP6ORPHA:2514Autosomal dominant primary microcephalyDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:3010ENSG000001302261261417q36.2dipeptidyl peptidase like 623832105[PMID]
MFSD2AORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) (loss of function) inAssessedHGNC:25897ENSG000001683896143971p34.2MFSD2 lysolipid transporter A, lysophospholipid26005865[PMID]_26005868[PMID]
ANKLE2ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:29101ENSG0000017691561606212q24.33ankyrin repeat and LEM domain containing 225259927[PMID]
ASPMORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:19048ENSG000000662796054811q31.3assembly factor for spindle microtubules
CDK5RAP2ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:18672ENSG000001368616082019q33.2CDK5 regulatory subunit associated protein 2
CDK6ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:1777ENSG000001058106033687q21.2cyclin dependent kinase 623918663[PMID]
CENPEORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:1856ENSG000001387781171434q24centromere protein E24748105[PMID]
CEP135ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:29086ENSG000001747996114234q12centrosomal protein 135
CEP152ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:29298ENSG0000010399561352915q21.1centrosomal protein 152
CITORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:1985ENSG0000012296660562912q24.23citron rho-interacting serine/threonine kinase27453578[PMID]
COPB2ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:2232ENSG000001844326069903q23coat protein complex I subunit beta 229036432[PMID]
CPAPORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:17272ENSG0000015184960927913q12.12-q12.13centrosome assembly and centriole elongation protein
KIF14ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:19181ENSG000001181936112791q32.1kinesin family member 1428892560[PMID]
KNL1ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:24054ENSG0000013781260917315q15.1kinetochore scaffold 1
LMNB1ORPHA:2514Autosomal dominant primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:6637ENSG000001133681503405q23.2lamin B132910914[PMID]
MCM7ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:6950ENSG000001665086005927q22.1minichromosome maintenance complex component 734059554[PMID]
MCPH1ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:6954ENSG000001473166071178p23.1microcephalin 1
METTL5ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:25006ENSG000001383826186282q31.1methyltransferase 5, N6-adenosine31564433[PMID]
NCAPD3ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:28952ENSG0000015150360927611q25non-SMC condensin II complex subunit D327737959[PMID]
NUP37ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:29929ENSG0000007518860926412q23.2nucleoporin 3730179222[PMID]
PDCD6IPORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:8766ENSG000001702486080743p22.3programmed cell death 6 interacting protein32286682[PMID]
PHC1ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:3182ENSG0000011175260297812p13.31polyhomeotic homolog 1
PYCR2ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:30262ENSG000001438116164061q42.12pyrroline-5-carboxylate reductase 227860360[PMID]
SARS1ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:10537ENSG000000316986075291p13.3seryl-tRNA synthetase 135790048[PMID]
SASS6ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:25403ENSG000001568766093211p21.2SAS-6 centriolar assembly protein24951542[PMID]
STILORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:10879ENSG000001234731815901p33STIL centriolar assembly protein
TAF13ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:11546ENSG000001977806007741p13.3TATA-box binding protein associated factor 1328257693[PMID]
TRAPPC10ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:11868ENSG0000016021860210321q22.3trafficking protein particle complex subunit 1035298461[PMID]
TRAPPC14ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:25604ENSG000001468266183507q22.1trafficking protein particle complex subunit 1430715179[PMID]
WARS1ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:12729ENSG0000014010519105014q32.2tryptophanyl-tRNA synthetase 135790048[PMID]
WDR62ORPHA:2512Autosomal recessive primary microcephalyDisease-causing germline mutation(s) inAssessedHGNC:24502ENSG0000007570261358319q13.12WD repeat domain 62
5

Prevalence and incidence

0 records

No prevalence record in this release.

6

HPO phenotypes

Orphanet has no HPO annotation for this code in this release.

7

Sources for this card