raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:1770

XY type gonadal dysgenesis-associated anomalies syndrome

historical

Type
Malformation syndrome
Group
Disorder
Inheritance
Autosomal recessive
Age of onset
Neonatal
Status
historical

A rare syndrome with 46,XY difference of sex development characterized by mild developmental delay and streak gonads associated with short stature, cardiac, renal, musculoskeletal, and ectodermal abnormalities (the latter including scalp defects and unusual hair whorls), and dysmorphic facial features (such as preauricular pits, short columella, and small nares). There have been no further descriptions in the literature since 1980.

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
enXY type gonadal dysgenesis-associated anomalies syndrome
frSyndrome de dysgénésie gonadique-anomalies multiples
deSyndrom der Gonadendysgenesie vom XY-Typ mit assoziierten FehlbildungenXY-Gonadendysgenesie mit assoziierten Anomalien
esSíndrome de disgenesia gonadal tipo XY-anomalías asociadas
itSindrome delle anomalie associate alla disgenesia gonadica tipo XY
nlGonadale dysgenesie, XY-type - geassocieerde anomalieën-syndroom
ptSíndrome de anomalias associadas a disgenesia gonadal tipo XY
plDysgenezja gonad typu XY i anomalie towarzyszące
csSyndrom zahrnující XY typ gonadální dysgeneze a související anomálie
ukСиндром аномалій, повязаних з дисгенезією гонад за типом XY
zhXY型性腺发育不良相关异常综合征
trXY tipi gonadal disgenezi-ilişkili anomaliler sendromu

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
OMIM618419Evalidated
ICD-10Q99.1NTBTattributedvalidated
MONDO0009302Evalidated
MeSHC565536Evalidated
UMLSC1856272Evalidated
GARD2541Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (3):

No children.

4

Genes

1 direct
GeneAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
PPP2R3CDisease-causing germline mutation(s) inAssessedHGNC:17485ENSG0000009202061590214q13.2protein phosphatase 2 regulatory subunit B''gamma34750818[PMID]
5

Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Cases/families2 casesWorldwideCase(s)Validated6158563[PMID]
Point prevalence<1 / 1 000 000—WorldwideClass onlyValidatedORPHANET_6158563[PMID]

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

6

HPO phenotypes

26 annotations · validated 2016-06-01
HPOTerm (as annotated by Orphanet)Diagnostic
Very frequent (99-80%)
HP:0010720Abnormal hair pattern
HP:0000069Abnormality of the ureter
HP:0000413Atresia of the external auditory canal
HP:0007598Bilateral single transverse palmar creases
HP:0004422Biparietal narrowing
HP:0001156Brachydactyly
HP:0011304Broad thumb
HP:0002750Delayed skeletal maturation
HP:0000133Gonadal dysgenesis
HP:0001256Intellectual disability, mild
HP:0001176Large hands
HP:0011342Mild global developmental delay
HP:0000147Polycystic ovaries
HP:0004467Preauricular pit
HP:0001537Umbilical hernia
HP:0001629Ventricular septal defect
Frequent (79-30%)
HP:0000288Abnormality of the philtrum
HP:0000175Cleft palate
HP:0000494Downslanted palpebral fissures
HP:0000286Epicanthus
HP:0008551Microtia
HP:0100335Non-midline cleft of the upper lip
HP:0000358Posteriorly rotated ears
HP:0008678Renal hypoplasia/aplasia
HP:0002000Short columella
HP:0004322Short stature
7

Sources for this card