raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:1621

3q13 microdeletion syndrome

Synonyms: Del(3)(q13) · Monosomy 3q13

Type
Malformation syndrome
Group
Disorder
Inheritance
Not applicable
Age of onset
Antenatal, Neonatal
Status
active

3q13 microdeletion syndrome is a rare chromosomal anomaly syndrome resulting from a partial deletion of the long arm of chromosome 3. Phenotype can be highly variable, but it is primarily characterized by significant developmental delay, postnatal growth above the mean, muscular hypotonia and distinctive facial features (such as broad and prominent forehead, hypertelorism, epicanthic folds, anti-mongloid slanted eyes, ptosis, short philtrum, protruding lips with a full lower lip, high arched palate). Abnormal hypoplastic male genitalia and skeletal abnormalities are frequently present.

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Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
en3q13 microdeletion syndromeDel(3)(q13) · Monosomy 3q13
frSyndrome de microdélétion 3q13Del(3)(q13) · Monosomie 3q13
deMikrodeletionssyndrom 3q13Del(3)(q13) · Monosomie 3q13
esSíndrome de microdeleción 3q13Del(3)(q13) · Monosomía 3q13
itSindrome da microdelezione 3q13Del(3)(q13) · Monosomia 3q13
nl3q13-microdeletiesyndroomDel(3)(q13) · Monosomie 3q13
ptSíndrome de microdeleção 3q13Deleção 3q13 · Monossomia 3q13
plZespół mikrodelecji 3q13Del(3)(q13) · Monosomia 3q13
csSyndrom 3q13 mikrodeleceDel(3)(q13) · Monozomie 3q13
ukСиндром мікроделеції 3q13Del(3)(q13) · Моносомія 3q13
zh3q13微缺失综合征3q13单体
tr3q13 mikrodelesyon sendromuDel(3)(q13) · Monozomi 3q13

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
OMIM615433Evalidated
ICD-10Q93.5NTBTattributedvalidated
ICD-11LD44.30NTBTindexvalidated
MONDO0014185Evalidated
MeSHC536808Evalidated
UMLSC2931338Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

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Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (1):

No children.

4

Genes

0 direct

Orphanet records no gene directly on this code.

5

Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Cases/families42 casesWorldwideCase(s)Validated24650298[PMID]
Point prevalence<1 / 1 000 000—WorldwideClass onlyValidatedORPHANET_24650298[PMID]

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

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HPO phenotypes

17 annotations · validated 2016-06-01
HPOTerm (as annotated by Orphanet)Diagnostic
Very frequent (99-80%)
HP:0000235Abnormality of the fontanelles or cranial sutures
HP:0001155Abnormality of the hand
HP:0000079Abnormality of the urinary system
HP:0001274Agenesis of corpus callosum
HP:0000463Anteverted nares
HP:0000028Cryptorchidism
HP:0000286Epicanthus
HP:0000316Hypertelorism
HP:0008736Hypoplasia of penis
HP:0001252Hypotonia
HP:0001387Joint stiffness
HP:0000343Long philtrum
HP:0000256Macrocephaly
HP:0000774Narrow chest
HP:0000470Short neck
HP:0006610Wide intermamillary distance
HP:0000431Wide nasal bridge

Run the differential on the 12 obligate / very frequent terms

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Sources for this card