raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:156728

Spondyloepimetaphyseal dysplasia, matrilin-3 type

Synonyms: SEMD, MATN3-related · SEMD, matrilin-3 type

Type
Disease
Group
Disorder
Inheritance
Autosomal recessive
Age of onset
Antenatal, Neonatal
Status
active

A rare primary bone dysplasia due to matrilin-3 variants and characterized by disproportionate early-onset dwarfism, bowing of the lower limbs, short, wide and stocky long bones with severe epiphyseal and metaphyseal changes, lumbar lordosis, hypoplastic iliac bones, flat ovoid vertebral bodies and normal hands.

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
enSpondyloepimetaphyseal dysplasia, matrilin-3 typeSEMD, MATN3-related · SEMD, matrilin-3 type
frDysplasie spondylo-épimétaphysaire type matrilin-3SEMD type MATN3 · SEMD type matrilin-3
deSpondyloepimetaphysäre Dysplasie, MATN3-Gen-assoziierte
esDisplasia espondiloepimetafisaria tipo matrilina-3
itDisplasia spondiloepimetafisaria, tipo matrilin-3SEMD, tipo MATN3 · SEMD, tipo matrilin-3
nlSpondylo-epimetafysaire dysplasie, matriline 3-typeSEMD, MATN3-gerelateerd · SEMD, matriline 3-type
ptDisplasia espondiloepimetafisária, tipo Matrilin
plDysplazja kręgowo-nasadowo-przynasadowa, typ matryliny-3SEMD, typ matryliny-3 · SEMD, związana z MATN3
csSpondyloepimetafyzární dysplázie, typ matrilin-3MATN3-vázaný SEMD · SEMD, typ matrilin-3
ukСпондилоепіметафізарна дисплазія, тип матриліну-3SEMD, повязані з MATN3 · SEMD, тип матриліну-3
zhMatrlin-3型脊柱干骺端发育不良SEMD MATRILIN-3型
trSpondiloepimetafizyal displazi, matrilin-3 tipiSEMD, MATN3-ilişkili · SEMD, matrilin-3 tipi

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
OMIM608728Evalidated
ICD-10Q77.7NTBTattributedvalidated
ICD-11LD24.3NTBTindexvalidated
MONDO0012108Evalidated
MeSHC563869Evalidated
UMLSC1837481Evalidated
GARD10611Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (1):

No children.

4

Genes

1 direct
GeneAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
MATN3Disease-causing germline mutation(s) inAssessedHGNC:6909ENSG000001320316021092p24.1matrilin 315121775[PMID]
5

Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Cases/families5 casesWorldwideCase(s)Validated15121775[PMID]
Point prevalence<1 / 1 000 000—WorldwideClass onlyValidatedORPHANET_15121775[PMID]

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

6

HPO phenotypes

11 annotations · validated 2017-05-18
HPOTerm (as annotated by Orphanet)Diagnostic
Very frequent (99-80%)
HP:0002979Bowing of the legs
HP:0009826Limb undergrowth
HP:0004322Short stature
Frequent (79-30%)
HP:0008873Disproportionate short-limb short stature
HP:0001377Limited elbow extension
HP:0002938Lumbar hyperlordosis
HP:0002515Waddling gait
Occasional (29-5%)
HP:0003037Enlarged joints
HP:0012368Flat face
HP:0000767Pectus excavatum
HP:0005257Thoracic hypoplasia

Run the differential on the 3 obligate / very frequent terms

Annotation source: 15121775[PMID]

7

Sources for this card