raremaprare-disease reference indexOrphadata 2026-06-23 · HPO 2026-09-01
ORPHA:137831

X-linked intellectual disability-cerebellar hypoplasia syndrome

Synonyms: OPHN1 syndrome · Oligophrenin-1 syndrome

Type
Disease
Group
Disorder
Inheritance
X-linked dominant
Age of onset
Infancy, Neonatal
Status
active

X-linked intellectual deficit-cerebellar hypoplasia, also known as OPHN1 syndrome, is a rare syndromic form of cerebellar dysgenesis characterized by moderate to severe intellectual deficit and cerebellar abnormalities.

1

Names in Orphadata languages

12 of 12 languages
LangNameSynonyms
enX-linked intellectual disability-cerebellar hypoplasia syndromeOPHN1 syndrome · Oligophrenin-1 syndrome
frSyndrome de déficience intellectuelle liée à l'X-hypoplasie cérébelleuseSyndrome OPHN1 · Syndrome oligonéphrine-1
deX-chromosomale Intelligenzminderung-zerebelläre Hypoplasie-SyndromOPHN1-Syndrom · Oligophrenin-1-Syndrom
esSíndrome de discapacidad intelectual-hipoplasia cerebelosa ligado al cromosoma XSíndrome OPHN1 · Síndrome de oligofrenina 1
itSindrome deficit cognitivo legato all'X-ipoplasia cerebellareSindrome OPHN1 · Sindrome da oligofrenina-1
nlX-gebonden intellectuele achterstand - cerebellaire hypoplasie-syndroomOPHN1-syndroom · Oligofrenine-1-syndroom
ptSíndrome de perturbação do desenvolvimento intelectual ligada ao X-hipoplasia cerebelosaSíndrome OPHN1 · Síndrome oligofrenina-1
plNiepełnosprawność intelektualna sprzężona z chromosomem - hipoplazja móżdżkuZespół oligofreniny-1 · Zespół OPHN1
csSyndrom zahrnující X-vázanou mentální retardaci a cerebelární hypopláziiOPHN1 syndrom · Oligophrenin-1 syndrom
ukСиндром Х-зчепленої розумової відсталості-гіпоплазії мозочкаСиндром олігофреніну-1 · Синдром OPHN1
zhX连锁遗传智力障碍-小脑发育不全综合征Oligophrenin-1综合征
trX'e bağlı zihinsel yetersizlik-serebellar hipoplazi sendromuOPHN1 sendromu · Oligophrenin-1 sendromu

Definition in:

2

Cross-references

qualifier = Orphanet mapping relation
SourceCodeQualifierICD relationValidation
OMIM300486Evalidated
ICD-10Q04.3NTBTattributedvalidated
ICD-11LD90NTBTattributedvalidated
MONDO0010337Evalidated
UMLSC4304937Evalidated

E exact · NTBT this ORPHAcode is narrower than the target · BTNT broader than the target · ND not decided.

3

Classification

Preferential parent (Orphanet linearisation):

Parents in the classifications (5):

No children.

4

Genes

1 direct
GeneAssociationStatusHGNCEnsemblOMIMLocusNameSource of validation
OPHN1Disease-causing germline mutation(s) inAssessedHGNC:8148ENSG00000079482300127Xq12oligophrenin 120528889[PMID]
5

Prevalence and incidence

2 records
TypeClassValueAreaQualificationValidationSource
Cases/families14 familiesWorldwideFamily(ies)Validated20528889[PMID]
Point prevalence<1 / 1 000 000—WorldwideClass onlyValidatedORPHANET_20528889[PMID]

Value is Orphadata's ValMoy: the mean estimate per 100 000 for prevalence and incidence, the number of cases or families for case reports.

6

HPO phenotypes

33 annotations · validated 2020-09-25
HPOTerm (as annotated by Orphanet)Diagnostic
Very frequent (99-80%)
HP:0001321Cerebellar hypoplasia
HP:0001263Global developmental delay
HP:0001249Intellectual disability
Frequent (79-30%)
HP:0001999Abnormal facial shape
HP:0002167Abnormality of speech or vocalization
HP:0001251Ataxia
HP:0000729Autistic behavior
HP:0000490Deeply set eye
HP:0002384Focal impaired awareness seizure
HP:0001290Generalized hypotonia
HP:0002123Generalized myoclonic seizure
HP:0001252Hypotonia
HP:0002342Intellectual disability, moderate
HP:0010864Intellectual disability, severe
HP:0002951Partial absence of cerebellar vermis
HP:0002465Poor speech
HP:0000817Reduced eye contact
HP:0012760Reduced social responsiveness
HP:0000486Strabismus
HP:0400000Tall chin
HP:0002119Ventriculomegaly
Occasional (29-5%)
HP:0006817Aplasia/Hypoplasia of the cerebellar vermis
HP:0007018Attention deficit hyperactivity disorder
HP:0002340Caudate atrophy
HP:0002280Enlarged cisterna magna
HP:0006913Frontal cortical atrophy
HP:0002080Intention tremor
HP:0000303Mandibular prognathia
HP:0002172Postural instability
HP:0000448Prominent nose
HP:0006951Retrocerebellar cyst
HP:0007112Temporal cortical atrophy
HP:0000431Wide nasal bridge

Run the differential on the 3 obligate / very frequent terms

Annotation source: 23622180[PMID]_20528889[PMID]_20301317[PMID]_23622180[PMID]

7

Sources for this card